Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tuberosum subsp. tuberosum).
Identifieur interne : 002061 ( Main/Exploration ); précédent : 002060; suivant : 002062Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tuberosum subsp. tuberosum).
Auteurs : John E. Bradshaw [Royaume-Uni] ; Christine A. Hackett ; Robert Lowe ; Karen Mclean ; Helen E. Stewart ; Irene Tierney ; Marco D R. Vilaro ; Glenn J. BryanSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 0040-5752 ] ; 2006.
Descripteurs français
- KwdFr :
- Cartographie chromosomique (MeSH), Chromosomes de plante (génétique), Feuilles de plante (génétique), Feuilles de plante (métabolisme), Génotype (MeSH), Liaison génétique (MeSH), Locus de caractère quantitatif (génétique), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Marqueurs génétiques (MeSH), Phytophthora (génétique), Ploïdies (MeSH), Population (MeSH), Solanum tuberosum (génétique), Solanum tuberosum (microbiologie), Solanum tuberosum (métabolisme).
- MESH :
- génétique : Chromosomes de plante, Feuilles de plante, Locus de caractère quantitatif, Maladies des plantes, Phytophthora, Solanum tuberosum.
- microbiologie : Maladies des plantes, Solanum tuberosum.
- métabolisme : Feuilles de plante, Solanum tuberosum.
- Cartographie chromosomique, Génotype, Liaison génétique, Marqueurs génétiques, Ploïdies, Population.
English descriptors
- KwdEn :
- Chromosome Mapping (MeSH), Chromosomes, Plant (genetics), Genetic Linkage (MeSH), Genetic Markers (MeSH), Genotype (MeSH), Phytophthora (genetics), Plant Diseases (genetics), Plant Diseases (microbiology), Plant Leaves (genetics), Plant Leaves (metabolism), Ploidies (MeSH), Population (MeSH), Quantitative Trait Loci (genetics), Solanum tuberosum (genetics), Solanum tuberosum (metabolism), Solanum tuberosum (microbiology).
- MESH :
- chemical : Genetic Markers.
- genetics : Chromosomes, Plant, Phytophthora, Plant Diseases, Plant Leaves, Quantitative Trait Loci, Solanum tuberosum.
- metabolism : Plant Leaves, Solanum tuberosum.
- microbiology : Plant Diseases, Solanum tuberosum.
- Chromosome Mapping, Genetic Linkage, Genotype, Ploidies, Population.
Abstract
Linkage analysis, Kruskal-Wallis analysis, interval mapping and graphical genotyping were performed on a potato diploid backcross family comprising 120 clones segregating for resistance to late blight. A hybrid between the Solanum tuberosum dihaploid clone PDH247 and the long-day-adapted S. phureja clone DB226(70) had been crossed to DB226(70) to produce the backcross family. Eighteen AFLP primer combinations provided 186 and 123 informative maternal and paternal markers respectively, with 63 markers in common to both parents. Eleven microsatellite (SSR) markers proved useful for identifying chromosomes. Linkage maps of both backcross parents were constructed. The results of a Kruskal-Wallis analysis, interval mapping and graphical genotyping were all consistent with a QTL or QTLs for blight resistance between two AFLP markers 30 cM apart on chromosome 4, which was identified by a microsatellite marker. The simplest explanation of the results is a single QTL with an allele from the dihaploid parent conferring resistance to race 1, 4 of P. infestans in the foliage in the glasshouse and to race 1, 2, 3, 4, 6, 7 in the foliage in the field and in tubers from glasshouse raised plants. The QTL was of large effect, and explained 78 and 51% of the variation in phenotypic scores for foliage blight in the glasshouse and field respectively, as well as 27% of the variation in tuber blight. Graphical genotyping and the differences in blight scores between the parental clones showed that all of the foliage blight resistance is accounted for by chromosome 4, whereas undetected QTLs for tuber resistance probably exist on other chromosomes. Graphical genotyping also explained the lack of precision in mapping the QTL(s) in terms of lack of appropriate recombinant chromosomes.
DOI: 10.1007/s00122-006-0353-8
PubMed: 16845519
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tuberosum subsp. tuberosum).</title><author><name sortKey="Bradshaw, John E" sort="Bradshaw, John E" uniqKey="Bradshaw J" first="John E" last="Bradshaw">John E. Bradshaw</name><affiliation wicri:level="1"><nlm:affiliation>Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, UK. john.bradshaw@scri.ac.uk</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA</wicri:regionArea><wicri:noRegion>DD2 5DA</wicri:noRegion></affiliation></author><author><name sortKey="Hackett, Christine A" sort="Hackett, Christine A" uniqKey="Hackett C" first="Christine A" last="Hackett">Christine A. Hackett</name></author><author><name sortKey="Lowe, Robert" sort="Lowe, Robert" uniqKey="Lowe R" first="Robert" last="Lowe">Robert Lowe</name></author><author><name sortKey="Mclean, Karen" sort="Mclean, Karen" uniqKey="Mclean K" first="Karen" last="Mclean">Karen Mclean</name></author><author><name sortKey="Stewart, Helen E" sort="Stewart, Helen E" uniqKey="Stewart H" first="Helen E" last="Stewart">Helen E. Stewart</name></author><author><name sortKey="Tierney, Irene" sort="Tierney, Irene" uniqKey="Tierney I" first="Irene" last="Tierney">Irene Tierney</name></author><author><name sortKey="Vilaro, Marco D R" sort="Vilaro, Marco D R" uniqKey="Vilaro M" first="Marco D R" last="Vilaro">Marco D R. Vilaro</name></author><author><name sortKey="Bryan, Glenn J" sort="Bryan, Glenn J" uniqKey="Bryan G" first="Glenn J" last="Bryan">Glenn J. Bryan</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2006">2006</date><idno type="RBID">pubmed:16845519</idno><idno type="pmid">16845519</idno><idno type="doi">10.1007/s00122-006-0353-8</idno><idno type="wicri:Area/Main/Corpus">002095</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">002095</idno><idno type="wicri:Area/Main/Curation">002095</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">002095</idno><idno type="wicri:Area/Main/Exploration">002095</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tuberosum subsp. tuberosum).</title><author><name sortKey="Bradshaw, John E" sort="Bradshaw, John E" uniqKey="Bradshaw J" first="John E" last="Bradshaw">John E. Bradshaw</name><affiliation wicri:level="1"><nlm:affiliation>Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, UK. john.bradshaw@scri.ac.uk</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA</wicri:regionArea><wicri:noRegion>DD2 5DA</wicri:noRegion></affiliation></author><author><name sortKey="Hackett, Christine A" sort="Hackett, Christine A" uniqKey="Hackett C" first="Christine A" last="Hackett">Christine A. Hackett</name></author><author><name sortKey="Lowe, Robert" sort="Lowe, Robert" uniqKey="Lowe R" first="Robert" last="Lowe">Robert Lowe</name></author><author><name sortKey="Mclean, Karen" sort="Mclean, Karen" uniqKey="Mclean K" first="Karen" last="Mclean">Karen Mclean</name></author><author><name sortKey="Stewart, Helen E" sort="Stewart, Helen E" uniqKey="Stewart H" first="Helen E" last="Stewart">Helen E. Stewart</name></author><author><name sortKey="Tierney, Irene" sort="Tierney, Irene" uniqKey="Tierney I" first="Irene" last="Tierney">Irene Tierney</name></author><author><name sortKey="Vilaro, Marco D R" sort="Vilaro, Marco D R" uniqKey="Vilaro M" first="Marco D R" last="Vilaro">Marco D R. Vilaro</name></author><author><name sortKey="Bryan, Glenn J" sort="Bryan, Glenn J" uniqKey="Bryan G" first="Glenn J" last="Bryan">Glenn J. Bryan</name></author></analytic><series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title><idno type="ISSN">0040-5752</idno><imprint><date when="2006" type="published">2006</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term><term>Chromosomes, Plant (genetics)</term><term>Genetic Linkage (MeSH)</term><term>Genetic Markers (MeSH)</term><term>Genotype (MeSH)</term><term>Phytophthora (genetics)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (metabolism)</term><term>Ploidies (MeSH)</term><term>Population (MeSH)</term><term>Quantitative Trait Loci (genetics)</term><term>Solanum tuberosum (genetics)</term><term>Solanum tuberosum (metabolism)</term><term>Solanum tuberosum (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Cartographie chromosomique (MeSH)</term><term>Chromosomes de plante (génétique)</term><term>Feuilles de plante (génétique)</term><term>Feuilles de plante (métabolisme)</term><term>Génotype (MeSH)</term><term>Liaison génétique (MeSH)</term><term>Locus de caractère quantitatif (génétique)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Marqueurs génétiques (MeSH)</term><term>Phytophthora (génétique)</term><term>Ploïdies (MeSH)</term><term>Population (MeSH)</term><term>Solanum tuberosum (génétique)</term><term>Solanum tuberosum (microbiologie)</term><term>Solanum tuberosum (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Chromosomes, Plant</term><term>Phytophthora</term><term>Plant Diseases</term><term>Plant Leaves</term><term>Quantitative Trait Loci</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Chromosomes de plante</term><term>Feuilles de plante</term><term>Locus de caractère quantitatif</term><term>Maladies des plantes</term><term>Phytophthora</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Plant Leaves</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Feuilles de plante</term><term>Solanum tuberosum</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Genetic Linkage</term><term>Genotype</term><term>Ploidies</term><term>Population</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Cartographie chromosomique</term><term>Génotype</term><term>Liaison génétique</term><term>Marqueurs génétiques</term><term>Ploïdies</term><term>Population</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Linkage analysis, Kruskal-Wallis analysis, interval mapping and graphical genotyping were performed on a potato diploid backcross family comprising 120 clones segregating for resistance to late blight. A hybrid between the Solanum tuberosum dihaploid clone PDH247 and the long-day-adapted S. phureja clone DB226(70) had been crossed to DB226(70) to produce the backcross family. Eighteen AFLP primer combinations provided 186 and 123 informative maternal and paternal markers respectively, with 63 markers in common to both parents. Eleven microsatellite (SSR) markers proved useful for identifying chromosomes. Linkage maps of both backcross parents were constructed. The results of a Kruskal-Wallis analysis, interval mapping and graphical genotyping were all consistent with a QTL or QTLs for blight resistance between two AFLP markers 30 cM apart on chromosome 4, which was identified by a microsatellite marker. The simplest explanation of the results is a single QTL with an allele from the dihaploid parent conferring resistance to race 1, 4 of P. infestans in the foliage in the glasshouse and to race 1, 2, 3, 4, 6, 7 in the foliage in the field and in tubers from glasshouse raised plants. The QTL was of large effect, and explained 78 and 51% of the variation in phenotypic scores for foliage blight in the glasshouse and field respectively, as well as 27% of the variation in tuber blight. Graphical genotyping and the differences in blight scores between the parental clones showed that all of the foliage blight resistance is accounted for by chromosome 4, whereas undetected QTLs for tuber resistance probably exist on other chromosomes. Graphical genotyping also explained the lack of precision in mapping the QTL(s) in terms of lack of appropriate recombinant chromosomes.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">16845519</PMID><DateCompleted><Year>2006</Year><Month>11</Month><Day>21</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0040-5752</ISSN><JournalIssue CitedMedium="Print"><Volume>113</Volume><Issue>5</Issue><PubDate><Year>2006</Year><Month>Sep</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tuberosum subsp. tuberosum).</ArticleTitle><Pagination><MedlinePgn>943-51</MedlinePgn></Pagination><Abstract><AbstractText>Linkage analysis, Kruskal-Wallis analysis, interval mapping and graphical genotyping were performed on a potato diploid backcross family comprising 120 clones segregating for resistance to late blight. A hybrid between the Solanum tuberosum dihaploid clone PDH247 and the long-day-adapted S. phureja clone DB226(70) had been crossed to DB226(70) to produce the backcross family. Eighteen AFLP primer combinations provided 186 and 123 informative maternal and paternal markers respectively, with 63 markers in common to both parents. Eleven microsatellite (SSR) markers proved useful for identifying chromosomes. Linkage maps of both backcross parents were constructed. The results of a Kruskal-Wallis analysis, interval mapping and graphical genotyping were all consistent with a QTL or QTLs for blight resistance between two AFLP markers 30 cM apart on chromosome 4, which was identified by a microsatellite marker. The simplest explanation of the results is a single QTL with an allele from the dihaploid parent conferring resistance to race 1, 4 of P. infestans in the foliage in the glasshouse and to race 1, 2, 3, 4, 6, 7 in the foliage in the field and in tubers from glasshouse raised plants. The QTL was of large effect, and explained 78 and 51% of the variation in phenotypic scores for foliage blight in the glasshouse and field respectively, as well as 27% of the variation in tuber blight. Graphical genotyping and the differences in blight scores between the parental clones showed that all of the foliage blight resistance is accounted for by chromosome 4, whereas undetected QTLs for tuber resistance probably exist on other chromosomes. Graphical genotyping also explained the lack of precision in mapping the QTL(s) in terms of lack of appropriate recombinant chromosomes.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bradshaw</LastName><ForeName>John E</ForeName><Initials>JE</Initials><AffiliationInfo><Affiliation>Scottish Crop Research Institute, Invergowrie, Dundee, DD2 5DA, UK. john.bradshaw@scri.ac.uk</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hackett</LastName><ForeName>Christine A</ForeName><Initials>CA</Initials></Author><Author ValidYN="Y"><LastName>Lowe</LastName><ForeName>Robert</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>McLean</LastName><ForeName>Karen</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Stewart</LastName><ForeName>Helen E</ForeName><Initials>HE</Initials></Author><Author ValidYN="Y"><LastName>Tierney</LastName><ForeName>Irene</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Vilaro</LastName><ForeName>Marco D R</ForeName><Initials>MD</Initials></Author><Author ValidYN="Y"><LastName>Bryan</LastName><ForeName>Glenn J</ForeName><Initials>GJ</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2006</Year><Month>07</Month><Day>15</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome Mapping</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032461" MajorTopicYN="N">Chromosomes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008040" MajorTopicYN="N">Genetic Linkage</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005819" MajorTopicYN="N">Genetic Markers</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011003" MajorTopicYN="Y">Ploidies</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011153" MajorTopicYN="N">Population</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011198" MajorTopicYN="N">Solanum tuberosum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2006</Year><Month>04</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2006</Year><Month>06</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2006</Year><Month>7</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2006</Year><Month>12</Month><Day>9</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2006</Year><Month>7</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">16845519</ArticleId><ArticleId IdType="doi">10.1007/s00122-006-0353-8</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Nucleic Acids Res. 1995 Nov 11;23(21):4407-14</Citation><ArticleIdList><ArticleId IdType="pubmed">7501463</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 1994 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Bryan</name><name sortKey="Hackett, Christine A" sort="Hackett, Christine A" uniqKey="Hackett C" first="Christine A" last="Hackett">Christine A. Hackett</name><name sortKey="Lowe, Robert" sort="Lowe, Robert" uniqKey="Lowe R" first="Robert" last="Lowe">Robert Lowe</name><name sortKey="Mclean, Karen" sort="Mclean, Karen" uniqKey="Mclean K" first="Karen" last="Mclean">Karen Mclean</name><name sortKey="Stewart, Helen E" sort="Stewart, Helen E" uniqKey="Stewart H" first="Helen E" last="Stewart">Helen E. Stewart</name><name sortKey="Tierney, Irene" sort="Tierney, Irene" uniqKey="Tierney I" first="Irene" last="Tierney">Irene Tierney</name><name sortKey="Vilaro, Marco D R" sort="Vilaro, Marco D R" uniqKey="Vilaro M" first="Marco D R" last="Vilaro">Marco D R. Vilaro</name></noCountry><country name="Royaume-Uni"><noRegion><name sortKey="Bradshaw, John E" sort="Bradshaw, John E" uniqKey="Bradshaw J" first="John E" last="Bradshaw">John E. 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